Shewanella oneidensis MR-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella oneidensis MR-1 is a freshwater bacterium notable for its versatility in electron transfer and metabolic processes. This organism is equipped with flagella, which contribute to its motility in aquatic environments. It possesses two replicons, indicating a complex genomic architecture that may facilitate its adaptability and survival in diverse conditions. The genome of S. oneidensis MR-1 is documented in two key accession numbers: AE014299.2 and AE014300.1. This genomic information provides insights into its genetic makeup and potential metabolic pathways. S. oneidensis MR-1 is well-studied for its ability to reduce metals and generate electricity, making it a model organism in bioremediation and bioenergy research. Ecologically, S. oneidensis MR-1 plays a significant role in biogeochemical cycling, particularly in freshwater environments. Its metabolic capabilities enable it to interact with various electron acceptors, contributing to the breakdown of organic matter and influencing nutrient cycling in aquatic ecosystems. The presence of this bacterium in freshwater habitats highlights its importance in maintaining ecological balance and its potential applications in environmental biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella oneidensis
StrainMR-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Shewanella oneidensis MR-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella oneidensis MR-1, Complete Genome

Gene Summary

Adenine Count

45554 bp

Thymine Count

45453 bp

Guanine Count

36009 bp

Cytosine Count

34597 bp

Genome Length

161613 bp

Protein-coding Genes

128 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive655830 - 655841Not Available
Zinc-containing alcohol dehydrogenase superfamily proteinSO_0640Q53FA7Positive668166 - 66916435348.9
Putative ci repressorSO_0641P44207Negative669361 - 67008326987.1
mu phage regulator nerSO_4769Not AvailablePositive670270 - 6704978571.51
IntegraseSO_0643P18416Positive670490 - 67263780320.0
TransposaseSO_0644Q9HHZ9Positive672706 - 67342527305.1
Hypothetical proteinSO_0645Not AvailablePositive673483 - 67402820847.3
Hypothetical proteinSO_0646Not AvailablePositive674015 - 67450918404.3
mu phage protein kilSO_0647Not AvailablePositive674509 - 6747248270.19
Hypothetical proteinSO_0648Not AvailablePositive674729 - 67535523523.1

Displaying genes 1 – 10 of 4342 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1743 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da

Displaying 1–10 of 1743 metabolites

Health Effects

No health effects information available for this bacterium.