Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit secg | K7R23_03100 | P0AGA1 | Negative | 686735 - 687067 | 11379.8 |
| m23 family metallopeptidase | K7R23_03105 | Q8K9M4 | Negative | 687282 - 688412 | 40889.1 |
| prepilin peptidase | K7R23_03110 | P31712 | Negative | 688409 - 689254 | 31942.1 |
| hypothetical protein | K7R23_03115 | Not Available | Negative | 689434 - 690282 | 31650.5 |
| type ii secretion system f family protein | K7R23_03120 | A5F382 | Negative | 690297 - 691325 | 38252.8 |
| flp pilus assembly complex atpase component tada | K7R23_03125 | P29480 | Negative | 691309 - 692667 | 50642.0 |
| hypothetical protein | K7R23_03130 | Not Available | Negative | 692850 - 693419 | 20700.9 |
| hypothetical protein | K7R23_03135 | Not Available | Negative | 693407 - 694303 | 33048.3 |
| pilus assembly protein | K7R23_03140 | Not Available | Negative | 694307 - 694849 | 20470.1 |
| type ii and iii secretion system protein | K7R23_03145 | P29481 | Negative | 694862 - 696319 | 53779.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

