Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is66 family insertion sequence element accessory protein tnpb | K7R23_02505 | P50359 | Positive | 580835 - 581182 | 13069.1 |
| is66-like element iscro1 family transposase | K7R23_02510 | P50360 | Positive | 581202 - 582773 | 58576.9 |
| sigma-54 dependent transcriptional regulator | K7R23_02515 | Not Available | Positive | 582806 - 583116 | 11494.5 |
| sigma-54 dependent transcriptional regulator | K7R23_02520 | P42620 | Positive | 583223 - 583762 | 20832.5 |
| duf805 domain-containing protein | K7R23_02525 | P64591 | Positive | 583892 - 584257 | 14223.7 |
| duf805 domain-containing protein | K7R23_02530 | P64593 | Positive | 584481 - 584840 | 13484.8 |
| dna-binding transcriptional regulator yhaj | K7R23_02535 | P67661 | Negative | 584891 - 585787 | 33166.1 |
| pirin family protein | K7R23_02540 | P42624 | Positive | 585892 - 586593 | 25723.6 |
| hypothetical protein | K7R23_02545 | P42625 | Positive | 586613 - 586774 | 5799.87 |
| serine dehydratase subunit alpha family protein | K7R23_02550 | A8AQ02 | Negative | 586853 - 588163 | 45435.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

