Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ygjv family protein | K7R23_02405 | P42603 | Negative | 552144 - 552698 | 20832.1 |
| altronate dehydratase family protein | K7R23_02410 | P42604 | Negative | 552866 - 554353 | 54475.4 |
| glucuronate isomerase | K7R23_02415 | A7ZRX6 | Negative | 554368 - 555780 | 53889.0 |
| mfs transporter | K7R23_02420 | P0AA79 | Positive | 556257 - 557558 | 46920.1 |
| transcriptional regulator exur | K7R23_02425 | P0ACL3 | Positive | 557765 - 558541 | 29889.5 |
| deda family protein | K7R23_02430 | P0AA65 | Positive | 558886 - 559548 | 24670.2 |
| envz/ompr regulon moderator mzra | K7R23_02435 | D2TR04 | Positive | 559552 - 559935 | 14278.3 |
| duf1090 domain-containing protein | K7R23_02440 | P42616 | Positive | 560084 - 560452 | 14014.6 |
| yqjd family protein | K7R23_02445 | P64583 | Positive | 560487 - 560792 | 11106.1 |
| phage holin family protein | K7R23_02450 | P64586 | Positive | 560795 - 561199 | 15090.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

