Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium:solute symporter family protein | K7R23_02205 | O06493 | Negative | 485089 - 486564 | 53002.5 |
| rida family protein | K7R23_02210 | O58584 | Negative | 486661 - 487053 | 14202.0 |
| d-aminoacylase | K7R23_02215 | P72349 | Negative | 487056 - 488507 | 53043.5 |
| amino acid deaminase | K7R23_02220 | O82872 | Positive | 488709 - 489929 | 44127.2 |
| ldh family oxidoreductase | K7R23_02225 | Q9I492 | Negative | 489967 - 490974 | 35217.2 |
| pyruvate/proton symporter btst | K7R23_02230 | P39396 | Positive | 491270 - 493420 | 77393.6 |
| ybdd/yjix family protein | K7R23_02235 | P0ADD0 | Positive | 493515 - 493718 | 7685.2 |
| gtpase | K7R23_02240 | P24203 | Positive | 493731 - 494687 | 35509.5 |
| aaa family atpase | K7R23_02245 | Not Available | Positive | 494875 - 496722 | 70264.3 |
| rpn family recombination-promoting nuclease/putative transposase | K7R23_02250 | P77768 | Negative | 496951 - 497892 | 36069.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

