Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| t3ss effector protein nleh | K7R23_02005 | Q326Z4 | Negative | 446505 - 447386 | 32882.0 |
| sigma-54 dependent transcriptional regulator | K7R23_02010 | Not Available | Positive | 448151 - 449098 | 36056.9 |
| sigma-54 dependent transcriptional regulator | K7R23_02015 | Not Available | Positive | 449165 - 449992 | 30539.8 |
| sigma-54 dependent transcriptional regulator | K7R23_02020 | Not Available | Positive | 450857 - 451971 | 40836.2 |
| is3 family transposase | K7R23_02025 | P0CF79 | Positive | 452036 - 453171 | 43703.7 |
| pyrimidine 5'-nucleotidase | K7R23_02030 | P0A8Y2 | Negative | 453787 - 454464 | 25116.0 |
| ribosomal protein s18-alanine n-acetyltransferase | K7R23_02035 | P0A946 | Negative | 454479 - 454925 | 16667.9 |
| dna polymerase iii subunit psi | K7R23_02040 | P28632 | Negative | 454894 - 455307 | 15336.5 |
| 16s rrna (guanine(1207)-n(2))-methyltransferase rsmc | K7R23_02045 | B7MNC1 | Positive | 455521 - 456549 | 37602.6 |
| Trna-leu | Not Available | Not Available | Positive | 456756 - 456842 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

