Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase | K7R23_01955 | P39408 | Negative | 436059 - 436835 | 28957.8 |
| patatin family protein | K7R23_01960 | P39407 | Negative | 436832 - 437905 | 39852.2 |
| duf1328 domain-containing protein | K7R23_01965 | A7ZVR8 | Negative | 438029 - 438190 | 5536.27 |
| molecular chaperone osmy | K7R23_01970 | P0AFH9 | Negative | 438318 - 438935 | 21394.3 |
| peptide chain release factor 3 | K7R23_01975 | A8ALY7 | Negative | 439342 - 440928 | 59474.6 |
| sigma-54 dependent transcriptional regulator | K7R23_01980 | Not Available | Positive | 441193 - 442342 | 40514.9 |
| sigma-54 dependent transcriptional regulator | K7R23_01985 | P77460 | Positive | 442441 - 443075 | 23211.7 |
| espj family t3ss effector adp-ribosyltransferase | K7R23_01990 | Not Available | Positive | 443394 - 444047 | 24625.6 |
| duf1076 domain-containing protein | K7R23_01995 | Not Available | Positive | 444876 - 445505 | 24261.3 |
| type iii effector | K7R23_02000 | Q8XAL7 | Negative | 445870 - 446439 | 21720.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

