Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:other | Not Available | Not Available | Positive | 416104 - 416287 | Not Available |
| 5-formyltetrahydrofolate cyclo-ligase | K7R23_01860 | P0AC29 | Positive | 416311 - 416907 | 22900.8 |
| hypothetical protein | K7R23_01865 | Not Available | Positive | 416912 - 417295 | 14419.0 |
| sigma-54 dependent transcriptional regulator | K7R23_01870 | Not Available | Positive | 417747 - 418193 | 16442.9 |
| phosphoglycerate dehydrogenase | K7R23_01875 | P0A9T2 | Negative | 418296 - 419528 | 43976.2 |
| ribose-5-phosphate isomerase rpia | K7R23_01880 | A7ZR23 | Negative | 419784 - 420443 | 22775.7 |
| dna-binding transcriptional regulator argp | K7R23_01885 | A8APC5 | Positive | 420604 - 421497 | 33385.5 |
| lysr family transcriptional regulator | K7R23_01890 | P72131 | Negative | 421502 - 422401 | 33892.6 |
| multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase nadr | K7R23_01895 | P24518 | Negative | 422394 - 423629 | 47399.5 |
| dna repair protein rada | K7R23_01900 | P24517 | Negative | 423849 - 425231 | 49428.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

