Citrobacter rodentium DO 14784

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter rodentium DO 14784 is a Gram-negative rod-shaped bacterium primarily found in the cecal and colonic luminal contents, as well as the colonic mucosa of the gut. This organism possesses flagella, indicating its motility within its habitat. C. rodentium is characterized by having two replicons, which may play a role in its genetic stability and adaptability. This pathogen is known to cause significant health effects, particularly in the context of diarrheal diseases, including diarrhea, colitis, and intestinal colitis. A notable consequence of C. rodentium infection is colonic crypt hyperplasia (CCH), a condition marked by an abnormal increase in the number of crypts in the colon, which can contribute to further gastrointestinal complications. The presence of C. rodentium in the gut lumen and its ability to interact with the colonic mucosa suggests its role in the microbiome and potential influence on gut health. Its pathogenicity underscores the importance of understanding microbial dynamics within the gut and their implications for gastrointestinal diseases. Furthermore, the accessions CP082833.1 and CP082834.1 provide genomic insights that can aid in the study of its virulence mechanisms and interactions with the host. Overall, the characteristics of Citrobacter rodentium DO 14784 highlight the complex relationships between gut microbiota and health, emphasizing the need for continued research in this area.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter rodentium
StrainDO 14784

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter rodentium DO 14784
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen
Biotic relationshipNot Available
Host(s)Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter rodentium DO 14784, Complete Genome

Gene Summary

Adenine Count

1210182 bp

Thymine Count

1208507 bp

Guanine Count

1451262 bp

Cytosine Count

1471924 bp

Genome Length

5341875 bp

Protein-coding Genes

4636 genes

Non-Coding Genes

451 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Ncrna_class:otherNot AvailableNot AvailablePositive416104 - 416287Not Available
5-formyltetrahydrofolate cyclo-ligaseK7R23_01860P0AC29Positive416311 - 41690722900.8
hypothetical proteinK7R23_01865Not AvailablePositive416912 - 41729514419.0
sigma-54 dependent transcriptional regulatorK7R23_01870Not AvailablePositive417747 - 41819316442.9
phosphoglycerate dehydrogenaseK7R23_01875P0A9T2Negative418296 - 41952843976.2
ribose-5-phosphate isomerase rpiaK7R23_01880A7ZR23Negative419784 - 42044322775.7
dna-binding transcriptional regulator argpK7R23_01885A8APC5Positive420604 - 42149733385.5
lysr family transcriptional regulatorK7R23_01890P72131Negative421502 - 42240133892.6
multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase nadrK7R23_01895P24518Negative422394 - 42362947399.5
dna repair protein radaK7R23_01900P24517Negative423849 - 42523149428.1

Displaying genes 751 – 760 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ColitisCausesPMC7953738
Intestinal colitisCausesPMC7953738
DiarrheaCausesPMC8510533
Colonic crypt hyperplasia (cch)CausesPMC8510533
Diarrheal diseaseCausesPMC8510533

Displaying health effects 1 – 5 of 5 in total