Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidative damage protection protein | K7R23_01410 | A8API1 | Positive | 321738 - 322010 | 10825.0 |
| membrane-bound lytic murein transglycosylase mltc | K7R23_01415 | A8API2 | Positive | 322110 - 323195 | 40393.1 |
| nucleoside permease | K7R23_01420 | P0AFF4 | Positive | 323407 - 324663 | 46353.8 |
| ornithine decarboxylase | K7R23_01425 | P21169 | Negative | 324828 - 326963 | 79345.8 |
| duf554 domain-containing protein | K7R23_01430 | Q46831 | Positive | 327389 - 328096 | 24606.5 |
| Trna-phe | Not Available | Not Available | Positive | 328202 - 328277 | Not Available |
| integrase arm-type dna-binding domain-containing protein | K7R23_01440 | P39347 | Positive | 328475 - 329737 | 47778.9 |
| transposase domain-containing protein | K7R23_01445 | Q9JMS9 | Positive | 329931 - 330086 | 5981.18 |
| sigma-54 dependent transcriptional regulator | K7R23_01450 | P03835 | Positive | 330118 - 330510 | 15091.8 |
| sigma-54 dependent transcriptional regulator | K7R23_01455 | P55379 | Negative | 330520 - 330822 | 11484.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

