Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i mannose-6-phosphate isomerase | K7R23_00910 | O31646 | Positive | 214405 - 216150 | 65987.2 |
| pts fructose transporter subunit iia | K7R23_00915 | Q5XAF5 | Positive | 216155 - 216583 | 14956.8 |
| pts sugar transporter subunit iib | K7R23_00920 | Q9RGG4 | Positive | 216595 - 217089 | 17989.6 |
| pts sugar transporter subunit iic | K7R23_00925 | P69803 | Positive | 217100 - 217903 | 28532.7 |
| pts system mannose/fructose/sorbose family transporter subunit iid | K7R23_00930 | P26382 | Positive | 217903 - 218721 | 29360.0 |
| glucose-6-phosphate isomerase | K7R23_00935 | Q5JE38 | Negative | 218773 - 219555 | 29524.1 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | K7R23_00940 | A8ALT3 | Negative | 219796 - 220746 | 34568.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | K7R23_00945 | P0AEM2 | Negative | 220748 - 221197 | 16019.8 |
| signal peptidase ii | K7R23_00950 | P13514 | Negative | 221707 - 222204 | 18197.4 |
| isoleucine--trna ligase | K7R23_00955 | A8ALT6 | Negative | 222204 - 225020 | 104153.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

