Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-carnitine/gamma-butyrobetaine antiport bcct transporter | K7R23_00860 | B5F753 | Positive | 200087 - 201604 | 56576.4 |
| crotonobetainyl-coa dehydrogenase | K7R23_00865 | A8ALR4 | Positive | 201638 - 202780 | 42555.8 |
| l-carnitine coa-transferase | K7R23_00870 | Q57TI9 | Positive | 202884 - 204101 | 44919.1 |
| crotonobetaine/carnitine-coa ligase | K7R23_00875 | A8ALR6 | Positive | 204158 - 205711 | 58542.3 |
| crotonobetainyl-coa hydratase | K7R23_00880 | A8ALR7 | Positive | 205764 - 206549 | 28030.6 |
| carnitine metabolism transcriptional regulator caif | K7R23_00885 | P0AE58 | Negative | 206776 - 207165 | 14929.3 |
| carbamoyl-phosphate synthase large subunit | K7R23_00890 | P14846 | Negative | 207412 - 210636 | 118169.0 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | K7R23_00895 | P0A6F2 | Negative | 210655 - 211803 | 41594.4 |
| 4-hydroxy-tetrahydrodipicolinate reductase | K7R23_00900 | P58209 | Negative | 212257 - 213078 | 28941.7 |
| laci family dna-binding transcriptional regulator | K7R23_00905 | P18811 | Negative | 213212 - 214219 | 36326.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

