Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase-associated protein rapa | K7R23_00760 | A8ALP3 | Positive | 175329 - 178235 | 109684.0 |
| bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rlua | K7R23_00765 | Q8FL93 | Positive | 178247 - 178906 | 24749.0 |
| co-chaperone djla | K7R23_00770 | Q8FL94 | Negative | 179016 - 179831 | 30745.5 |
| lps assembly protein lptd | K7R23_00775 | Q326H9 | Positive | 180086 - 182443 | 89970.4 |
| peptidylprolyl isomerase sura | K7R23_00780 | P0ABZ8 | Positive | 182497 - 183783 | 47106.2 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | K7R23_00785 | A7ZHE5 | Positive | 183783 - 184772 | 35157.0 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | K7R23_00790 | B7LVU5 | Positive | 184769 - 185590 | 30542.2 |
| co2+/mg2+ efflux protein apag | K7R23_00795 | A8ALQ0 | Positive | 185593 - 185970 | 13921.6 |
| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) apah | K7R23_00800 | B5F769 | Positive | 185981 - 186829 | 31531.4 |
| type 3 dihydrofolate reductase | K7R23_00805 | P31073 | Negative | 186874 - 187353 | 17957.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

