Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine abc transporter substrate binding subunit | K7R23_00710 | P31550 | Positive | 162294 - 163277 | 36598.9 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | K7R23_00715 | Q8ZRV1 | Positive | 163253 - 164863 | 59609.6 |
| thiamine abc transporter atp-binding protein thiq | K7R23_00720 | Q5PDF8 | Positive | 164847 - 165557 | 25699.5 |
| deda family protein | K7R23_00725 | P30149 | Negative | 165742 - 166509 | 28225.0 |
| arabinose operon transcriptional regulator arac | K7R23_00730 | P0A9E1 | Negative | 166595 - 167473 | 33205.6 |
| ribulokinase | K7R23_00735 | Q5PDF1 | Positive | 167812 - 169521 | 61330.9 |
| l-arabinose isomerase | K7R23_00740 | P58538 | Positive | 169532 - 171034 | 55953.0 |
| l-ribulose-5-phosphate 4-epimerase | K7R23_00745 | P08203 | Positive | 171260 - 171955 | 25469.3 |
| duf4751 family protein | K7R23_00750 | Not Available | Negative | 171991 - 172374 | 15198.9 |
| dna polymerase ii | K7R23_00755 | P21189 | Positive | 172779 - 175130 | 89942.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

