Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yacc family pilotin-like protein | K7R23_00410 | P0AA96 | Positive | 93171 - 93518 | 12900.4 |
| polyamine aminopropyltransferase | K7R23_00415 | A8ALG8 | Positive | 93623 - 94489 | 32385.0 |
| adenosylmethionine decarboxylase | K7R23_00420 | A7ZHK9 | Positive | 94505 - 95299 | 30439.4 |
| sigma-54 dependent transcriptional regulator | K7R23_00425 | Q01610 | Positive | 95488 - 95622 | 5157.28 |
| deor/glpr family dna-binding transcription regulator | K7R23_00430 | P52598 | Negative | 95611 - 96390 | 28526.6 |
| d-threonate 4-phosphate dehydrogenase | K7R23_00435 | P58718 | Negative | 96400 - 97383 | 35162.7 |
| d-threonate kinase | K7R23_00440 | Q8ZRS5 | Negative | 97373 - 98644 | 45238.6 |
| 2-keto-3-deoxygluconate permease 1 | K7R23_00445 | P65208 | Negative | 98641 - 99594 | 31777.9 |
| protein yacl | K7R23_00450 | A8ALH0 | Negative | 99776 - 100138 | 14080.5 |
| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | K7R23_00455 | Q8ZRS8 | Negative | 100340 - 102937 | 93405.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

