Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ump kinase | K7R23_00210 | A6T4X3 | Negative | 45442 - 46167 | 26000.9 |
| translation elongation factor ts | K7R23_00215 | Q57T38 | Negative | 46320 - 47171 | 30361.6 |
| 30s ribosomal protein s2 | K7R23_00220 | A8ALC1 | Negative | 47307 - 48032 | 26760.1 |
| type i methionyl aminopeptidase | K7R23_00225 | P0A1X7 | Positive | 48480 - 49274 | 29293.3 |
| bifunctional uridylyltransferase/uridylyl-removing protein glnd | K7R23_00230 | A8ALC3 | Positive | 49383 - 52055 | 102483.0 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | K7R23_00235 | A8ALC4 | Positive | 52086 - 52910 | 29918.8 |
| duf3461 family protein | K7R23_00240 | A8ALC5 | Positive | 53021 - 53407 | 15095.0 |
| dna-binding transcriptional regulator cdar | K7R23_00245 | P37047 | Negative | 53717 - 54874 | 43690.1 |
| serine endoprotease degp | K7R23_00250 | P0C0V1 | Negative | 55024 - 56439 | 49083.1 |
| dgtpase | K7R23_00255 | B7NIC3 | Negative | 56569 - 58086 | 59279.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

