Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysine decarboxylase ldcc | K7R23_00110 | P52095 | Negative | 21568 - 23706 | 80760.8 |
| sigma-54 dependent transcriptional regulator | K7R23_00115 | P52404 | Negative | 23783 - 25225 | 52357.7 |
| is66-like element iscro1 family transposase | K7R23_00120 | P50360 | Negative | 25257 - 26828 | 58576.9 |
| is66 family insertion sequence element accessory protein tnpb | K7R23_00125 | P50359 | Negative | 26848 - 27195 | 13069.1 |
| is66 family insertion sequence hypothetical protein | K7R23_00130 | P0CF49 | Negative | 27195 - 27872 | 25237.8 |
| sigma-54 dependent transcriptional regulator | K7R23_00135 | Not Available | Negative | 27925 - 28248 | 11798.3 |
| acetyl-coa carboxylase carboxyl transferase subunit alpha | K7R23_00140 | B5F8U6 | Negative | 28430 - 29389 | 35363.7 |
| dna polymerase iii subunit alpha | K7R23_00145 | P14567 | Negative | 29402 - 32884 | 130181.0 |
| ribonuclease hii | K7R23_00150 | A8ALA5 | Negative | 32909 - 33505 | 21341.0 |
| lipid-a-disaccharide synthase | K7R23_00155 | Q57T26 | Negative | 33502 - 34650 | 42479.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

