Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s ribosomal rna | Not Available | Not Available | Positive | 322 - 3308 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 3626 - 3701 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 3873 - 5414 | Not Available |
| d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphatase | K7R23_00025 | Q8Z989 | Negative | 5785 - 6351 | 20849.8 |
| methionine abc transporter atp-binding protein metn | K7R23_00030 | Q8ZRM9 | Positive | 6543 - 7574 | 37657.6 |
| methionine abc transporter permease meti | K7R23_00035 | P31547 | Positive | 7567 - 8220 | 23320.7 |
| methionine abc transporter substrate-binding lipoprotein metq | K7R23_00040 | P28635 | Positive | 8262 - 9077 | 29418.2 |
| rcs stress response system protein rcsf | K7R23_00045 | P69412 | Positive | 9195 - 9599 | 14158.4 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | K7R23_00050 | P28634 | Positive | 9596 - 10303 | 26608.2 |
| proline--trna ligase | K7R23_00055 | B7LHA4 | Positive | 10414 - 12132 | 63244.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

