Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellin lysine-n-methylase | K7R23_16425 | Q9KJV4 | Positive | 3500196 - 3501401 | 45458.8 |
| Rna polymerase sigma factor | K7R23_16430 | P0A2E9 | Positive | 3501595 - 3502314 | 27536.8 |
| Attr | Not Available | Not Available | Positive | 3514454 - 3514465 | Not Available |
| Attl | Not Available | Not Available | Positive | 3816680 - 3816691 | Not Available |
| Superfamily ii dna/rna helicase | K7R23_18020 | P21693 | Positive | 3824786 - 3826159 | 49169.9 |
| trna 2-thiocytidine(32) synthetase ttca | K7R23_18025 | Q8X8Q5 | Negative | 3826200 - 3827135 | 35566.1 |
| Bacteriophage integrase | K7R23_18030 | P76056 | Negative | 3827181 - 3828479 | 48355.8 |
| Putative tail tip assembly protein | K7R23_18035 | P03749 | Positive | 3828395 - 3828709 | 10645.6 |
| is3 family transposase | K7R23_18040 | Not Available | Negative | 3828689 - 3829382 | 24159.8 |
| Transposase insf | K7R23_18045 | P0CF79 | Negative | 3829419 - 3830554 | 43703.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

