Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter rodentium |
| Strain | DO 14784 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | cecal and colonic luminal contents; colonic mucosa; gut; gut lumen; lumen |
| Biotic relationship | Not Available |
| Host(s) | Rodentia |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1210182 bp
Thymine Count
1208507 bp
Guanine Count
1451262 bp
Cytosine Count
1471924 bp
Genome Length
5341875 bp
Protein-coding Genes
4636 genes
Non-Coding Genes
451 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ogr/delta-like zinc finger family protein | K7R23_08225 | P37057 | Positive | 1758311 - 1758571 | 9678.37 |
| Hok/gef family protein | K7R23_08230 | P37305 | Positive | 1758762 - 1758902 | 5256.68 |
| Zinc ribbon domain-containing protein | K7R23_08235 | Not Available | Positive | 1759167 - 1759499 | 11852.0 |
| Type vi secretion protein | K7R23_08240 | Not Available | Positive | 1759504 - 1760397 | 33817.9 |
| conjugal transfer protein traf | K7R23_08245 | Not Available | Positive | 1760553 - 1761629 | 39014.9 |
| Transcriptional regulator | K7R23_08250 | Not Available | Negative | 1761766 - 1762083 | 11528.2 |
| Attr | Not Available | Not Available | Positive | 1774923 - 1774934 | Not Available |
| Attl | Not Available | Not Available | Positive | 2818499 - 2818511 | Not Available |
| Isxac3 transposase | K7R23_13150 | Q79E92 | Positive | 2818993 - 2819223 | 8928.48 |
| Transposase insf | K7R23_13155 | P16940 | Negative | 2819230 - 2820090 | 33339.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Colitis | Causes | PMC7953738 |
| Intestinal colitis | Causes | PMC7953738 |
| Diarrhea | Causes | PMC8510533 |
| Colonic crypt hyperplasia (cch) | Causes | PMC8510533 |
| Diarrheal disease | Causes | PMC8510533 |

