Dickeya poaceiphila

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya poaceiphila is a rod-shaped bacterium characterized by the presence of flagella, which facilitate its motility. This bacterium is notable for its genetic complexity, possessing a total of seven replicons. The presence of multiple replicons can indicate a diverse genetic repertoire, potentially contributing to its adaptability in various environments. The genomic data for Dickeya poaceiphila encompasses several accessions, including CP042220.2, CM001975.1, AOOD01000059.1, AOOD01000060.1, AOOD01000061.1, AOOD01000062.1, and AOOD01000063.1. These accessions represent different genomic sequences that provide insights into the bacterium's genetic makeup and evolutionary history. Ecologically, Dickeya poaceiphila is significant as it is known to be associated with plants, particularly in agricultural settings. Its motility, facilitated by flagella, may play a crucial role in its ability to colonize plant surfaces and potentially contribute to its pathogenicity. Understanding the traits of Dickeya poaceiphila, including its rod shape, flagella, and genetic structure, can aid in the development of management strategies for diseases it may cause in plants, thus highlighting the importance of studying its biological and ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya poaceiphila
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Poaceae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

1020949 bp

Thymine Count

1019894 bp

Guanine Count

1141901 bp

Cytosine Count

1134410 bp

Genome Length

4317154 bp

Protein-coding Genes

3640 genes

Non-Coding Genes

293 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhDpoa569_0002615C6DBW3Positive2901385 - 290185517610.4
peptidoglycan dd-transpeptidase mrdaDpoa569_0002616P0AD67Positive2901892 - 290380271804.7
peptidoglycan glycosyltransferase mrdbDpoa569_0002617P0ABG8Positive2903810 - 290492240543.5
endolytic peptidoglycan transglycosylase rlpaDpoa569_0002618Q8ZDG6Positive2904932 - 290606539622.6
d-alanyl-d-alanine carboxypeptidase dacaDpoa569_0002619P0AEB4Positive2906245 - 290745644267.3
duf493 family proteinDpoa569_0002620C5BGD7Positive2907591 - 29078549813.93
lipoyl(octanoyl) transferase lipbDpoa569_0002621C6DBV7Positive2907992 - 290869625927.2
lipoyl synthaseDpoa569_0002622C6DBV6Positive2908867 - 290983236350.1
twin-arginine translocase subunit tateDpoa569_0002623C6CQJ7Negative2909937 - 29101467287.86
deaminated glutathione amidaseDpoa569_0002624P58054Negative2910315 - 291110328753.2

Displaying genes 2651 – 2660 of 7804 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.