Abiotrophia defectiva subsp. subspepi var. varfungi

microaerophile

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Aerococcaceae

Genus

Abiotrophia

Description

Abiotrophia defectiva subsp. subspepi var. varfungi is a microaerophilic bacterium primarily found in saliva. This organism exhibits a unique adaptation to low-oxygen environments, which allows it to thrive in the oral cavity where oxygen levels are often reduced compared to the atmosphere. Genetically, A. defectiva subsp. subspepi var. varfungi has two replicons, indicating a complex genomic structure that may contribute to its metabolic capabilities and resilience in its specific habitat. The organism is represented in genetic databases with the accessions CP146287.1 and CP053988.1, which provide sequences that researchers can use for further studies. The presence of A. defectiva subsp. subspepi var. varfungi in saliva suggests its potential role in oral microbiota. Given its microaerophilic nature, it may interact with other microbial species in the oral ecosystem, contributing to the balance of microbial populations. Understanding this bacterium's ecological role could provide insights into oral health and disease, as the oral cavity serves as a critical interface between the body and external environment. Further research into its interactions within the oral microbiome and its potential implications for human health is warranted.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyAerococcaceae
GenusAbiotrophia
SpeciesAbiotrophia defectiva
Strainsubsp. subspepi var. varfungi

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Abiotrophia defectiva subsp. subspepi var. varfungi
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsaliva
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Abiotrophia defectiva subsp. subspepi var. varfungi , Complete Genome

Gene Summary

Adenine Count

547131 bp

Thymine Count

540685 bp

Guanine Count

479650 bp

Cytosine Count

477676 bp

Genome Length

2045142 bp

Protein-coding Genes

1809 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tigr00282 family metallophosphoesteraseFOC79_08045O31775Positive1743680 - 174448028950.9
dna mismatch repair protein mutsFOC79_08050Q82ZA2Positive1744517 - 174708196210.6
dna mismatch repair endonuclease mutlFOC79_08055Q1WT16Positive1747114 - 174908772840.6
peptide-methionine (r)-s-oxide reductase msrbFOC79_08060Q032Q9Positive1749084 - 174952116171.6
holliday junction branch migration protein ruvaFOC79_08065A2RP07Positive1749527 - 175011421464.9
holliday junction branch migration dna helicase ruvbFOC79_08070A5VIX2Positive1750128 - 175115638146.6
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaFOC79_08075Q837H2Positive1751165 - 175219938161.6
helix-turn-helix transcriptional regulatorFOC79_08080Q93K57Negative1752274 - 175262712938.6
duf4044 domain-containing proteinFOC79_08085Not AvailableNegative1752651 - 17528035615.24
nadp-dependent phosphogluconate dehydrogenaseFOC79_08090P80859Positive1752995 - 175444052700.8

Displaying genes 3591 – 3600 of 3820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.