Abiotrophia defectiva subsp. subspepi var. varfungi

microaerophile

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Aerococcaceae

Genus

Abiotrophia

Description

Abiotrophia defectiva subsp. subspepi var. varfungi is a microaerophilic bacterium primarily found in saliva. This organism exhibits a unique adaptation to low-oxygen environments, which allows it to thrive in the oral cavity where oxygen levels are often reduced compared to the atmosphere. Genetically, A. defectiva subsp. subspepi var. varfungi has two replicons, indicating a complex genomic structure that may contribute to its metabolic capabilities and resilience in its specific habitat. The organism is represented in genetic databases with the accessions CP146287.1 and CP053988.1, which provide sequences that researchers can use for further studies. The presence of A. defectiva subsp. subspepi var. varfungi in saliva suggests its potential role in oral microbiota. Given its microaerophilic nature, it may interact with other microbial species in the oral ecosystem, contributing to the balance of microbial populations. Understanding this bacterium's ecological role could provide insights into oral health and disease, as the oral cavity serves as a critical interface between the body and external environment. Further research into its interactions within the oral microbiome and its potential implications for human health is warranted.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyAerococcaceae
GenusAbiotrophia
SpeciesAbiotrophia defectiva
Strainsubsp. subspepi var. varfungi

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Abiotrophia defectiva subsp. subspepi var. varfungi
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsaliva
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Abiotrophia defectiva subsp. subspepi var. varfungi , Complete Genome

Gene Summary

Adenine Count

547131 bp

Thymine Count

540685 bp

Guanine Count

479650 bp

Cytosine Count

477676 bp

Genome Length

2045142 bp

Protein-coding Genes

1809 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphonate abc transporter atp-binding proteinFOC79_04845Q9CIQ6Positive1058552 - 105929827571.4
phosphonate abc transporter, permease protein phneFOC79_04850A0A140NFA3Positive1059311 - 106013530656.3
phosphonate abc transporter, permease protein phneFOC79_04855O69053Positive1060148 - 106095729184.4
lpxtg cell wall anchor domain-containing proteinFOC79_04860Not AvailablePositive1061172 - 106208332552.1
trka family potassium uptake proteinFOC79_04865P39760Negative1062143 - 106282925312.6
trkh family potassium uptake proteinFOC79_04870P43440Negative1062851 - 106422750780.6
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhFOC79_04875B8DEV0Positive1064314 - 106479317993.2
lurp-one-related family proteinFOC79_04880P94352Positive1064806 - 106529118545.4
hypothetical proteinFOC79_04885Not AvailableNegative1065350 - 106602724845.2
ydcf family proteinFOC79_04890P42598Positive1066242 - 106693125265.7

Displaying genes 2951 – 2960 of 3820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.