Abiotrophia defectiva subsp. subspepi var. varfungi

microaerophile

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Aerococcaceae

Genus

Abiotrophia

Description

Abiotrophia defectiva subsp. subspepi var. varfungi is a microaerophilic bacterium primarily found in saliva. This organism exhibits a unique adaptation to low-oxygen environments, which allows it to thrive in the oral cavity where oxygen levels are often reduced compared to the atmosphere. Genetically, A. defectiva subsp. subspepi var. varfungi has two replicons, indicating a complex genomic structure that may contribute to its metabolic capabilities and resilience in its specific habitat. The organism is represented in genetic databases with the accessions CP146287.1 and CP053988.1, which provide sequences that researchers can use for further studies. The presence of A. defectiva subsp. subspepi var. varfungi in saliva suggests its potential role in oral microbiota. Given its microaerophilic nature, it may interact with other microbial species in the oral ecosystem, contributing to the balance of microbial populations. Understanding this bacterium's ecological role could provide insights into oral health and disease, as the oral cavity serves as a critical interface between the body and external environment. Further research into its interactions within the oral microbiome and its potential implications for human health is warranted.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyAerococcaceae
GenusAbiotrophia
SpeciesAbiotrophia defectiva
Strainsubsp. subspepi var. varfungi

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Abiotrophia defectiva subsp. subspepi var. varfungi
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsaliva
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Abiotrophia defectiva subsp. subspepi var. varfungi , Complete Genome

Gene Summary

Adenine Count

547131 bp

Thymine Count

540685 bp

Guanine Count

479650 bp

Cytosine Count

477676 bp

Genome Length

2045142 bp

Protein-coding Genes

1809 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein jagFOC79_04145F9ULM5Positive898227 - 89903929629.2
pts system trehalose-specific eiibc componentFOC79_04150P36672Positive899218 - 90072954770.3
alpha,alpha-phosphotrehalaseFOC79_04155P39795Positive900786 - 90244763189.1
germn domain-containing proteinFOC79_04160Not AvailablePositive902597 - 90375442391.8
trehalose operon repressorFOC79_04165P39796Positive903830 - 90454928020.8
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgFOC79_04170Q82YX0Negative904627 - 90654370408.8
8-oxo-dgtp diphosphataseFOC79_04175P41354Negative906564 - 90704018322.7
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeFOC79_04180Q820T0Negative907053 - 90843550362.2
replicative dna helicaseFOC79_04185P37469Positive908674 - 91003250747.2
alpha-amylaseFOC79_04190P19571Negative910166 - 91162355925.6

Displaying genes 2811 – 2820 of 3820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.