Abiotrophia defectiva subsp. subspepi var. varfungi

microaerophile

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Aerococcaceae

Genus

Abiotrophia

Description

Abiotrophia defectiva subsp. subspepi var. varfungi is a microaerophilic bacterium primarily found in saliva. This organism exhibits a unique adaptation to low-oxygen environments, which allows it to thrive in the oral cavity where oxygen levels are often reduced compared to the atmosphere. Genetically, A. defectiva subsp. subspepi var. varfungi has two replicons, indicating a complex genomic structure that may contribute to its metabolic capabilities and resilience in its specific habitat. The organism is represented in genetic databases with the accessions CP146287.1 and CP053988.1, which provide sequences that researchers can use for further studies. The presence of A. defectiva subsp. subspepi var. varfungi in saliva suggests its potential role in oral microbiota. Given its microaerophilic nature, it may interact with other microbial species in the oral ecosystem, contributing to the balance of microbial populations. Understanding this bacterium's ecological role could provide insights into oral health and disease, as the oral cavity serves as a critical interface between the body and external environment. Further research into its interactions within the oral microbiome and its potential implications for human health is warranted.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyAerococcaceae
GenusAbiotrophia
SpeciesAbiotrophia defectiva
Strainsubsp. subspepi var. varfungi

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Abiotrophia defectiva subsp. subspepi var. varfungi
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsaliva
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Abiotrophia defectiva subsp. subspepi var. varfungi , Complete Genome

Gene Summary

Adenine Count

547131 bp

Thymine Count

540685 bp

Guanine Count

479650 bp

Cytosine Count

477676 bp

Genome Length

2045142 bp

Protein-coding Genes

1809 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pep/pyruvate-binding domain-containing proteinV7R82_07215O34309Negative1550613 - 155310594299.9
cdp-archaeol synthaseV7R82_07220Q8U3Q8Negative1553116 - 155370622206.9
gtra family proteinV7R82_07225Q927U4Negative1554202 - 155459114569.4
abc transporter substrate-binding proteinV7R82_07230P0A2C8Negative1554591 - 155566440639.4
abc transporter permeaseV7R82_07235P0AFK8Negative1555657 - 155648431058.0
abc transporter permeaseV7R82_07240P45170Negative1556477 - 155729530649.6
abc transporter atp-binding proteinV7R82_07245Q830W6Negative1557306 - 155839740932.8
Trna-lysNot AvailableNot AvailablePositive1558594 - 1558666Not Available
atp-dependent clp endopeptidase proteolytic subunit clppV7R82_07255Q837R0Negative1558831 - 155942721519.0
50s ribosomal protein l32V7R82_07260Q5HQ39Negative1559596 - 15597756731.28

Displaying genes 1511 – 1520 of 3820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.