Shinella zoogloeoides 1-16M

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella zoogloeoides 1-16M is a bacterium characterized by possessing five replicons, which contribute to its genetic diversity and adaptability. This species is cataloged under multiple accessions: CP086610.1, CP086611.1, CP086612.1, CP086613.1, and CP086614.1, reflecting its genomic data available in public databases. The presence of multiple replicons can indicate a complex regulatory system within the bacterium, which may allow for efficient management of its metabolic processes and responses to environmental changes. Such genetic architecture might enhance its survival in varied ecological niches, particularly in environments where nutrient availability fluctuates. In terms of ecological insight, the ability of Shinella zoogloeoides to thrive in diverse conditions may suggest its role in biogeochemical cycles, particularly in the degradation of organic matter. The multiple replicons could also be an advantage in horizontal gene transfer, potentially allowing this species to acquire traits beneficial for its survival, such as antibiotic resistance or enhanced metabolic capabilities. Overall, the genetic complexity of Shinella zoogloeoides 1-16M, highlighted by its five replicons, positions it as a significant player in microbial ecosystems, possibly contributing to nutrient cycling and organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella zoogloeoides
Strain1-16M

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella zoogloeoides 1-16M, Complete Genome

Gene Summary

Adenine Count

713258 bp

Thymine Count

704761 bp

Guanine Count

1279043 bp

Cytosine Count

1294829 bp

Genome Length

3991891 bp

Protein-coding Genes

3764 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system vapb family antitoxinK8M09_23280Q9X7L3Positive84189 - 844288944.73
type ii toxin-antitoxin system vapc family toxinK8M09_23285Q9X7L4Positive84428 - 8487116262.5
hypothetical proteinK8M09_23290Not AvailableNegative84891 - 8532215726.8
helix-turn-helix domain-containing proteinK8M09_23295C1D3U5Negative85384 - 8569811953.7
single-stranded dna-binding proteinK8M09_23300Q9ZAQ8Positive86293 - 8662212207.3
hypothetical proteinK8M09_23305Not AvailableNegative86705 - 869117436.06
hypothetical proteinK8M09_23310Not AvailablePositive87315 - 8832837892.6
type ii toxin-antitoxin system rele/pare family toxinK8M09_23315P44031Positive88398 - 8875113469.6
helix-turn-helix domain-containing proteinK8M09_23320Not AvailablePositive88748 - 8904110994.1
hypothetical proteinK8M09_23325Not AvailableNegative89159 - 8945511103.0

Displaying genes 4661 – 4670 of 4728 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.