Shinella zoogloeoides 1-16M

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella zoogloeoides 1-16M is a bacterium characterized by possessing five replicons, which contribute to its genetic diversity and adaptability. This species is cataloged under multiple accessions: CP086610.1, CP086611.1, CP086612.1, CP086613.1, and CP086614.1, reflecting its genomic data available in public databases. The presence of multiple replicons can indicate a complex regulatory system within the bacterium, which may allow for efficient management of its metabolic processes and responses to environmental changes. Such genetic architecture might enhance its survival in varied ecological niches, particularly in environments where nutrient availability fluctuates. In terms of ecological insight, the ability of Shinella zoogloeoides to thrive in diverse conditions may suggest its role in biogeochemical cycles, particularly in the degradation of organic matter. The multiple replicons could also be an advantage in horizontal gene transfer, potentially allowing this species to acquire traits beneficial for its survival, such as antibiotic resistance or enhanced metabolic capabilities. Overall, the genetic complexity of Shinella zoogloeoides 1-16M, highlighted by its five replicons, positions it as a significant player in microbial ecosystems, possibly contributing to nutrient cycling and organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella zoogloeoides
Strain1-16M

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella zoogloeoides 1-16M, Complete Genome

Gene Summary

Adenine Count

713258 bp

Thymine Count

704761 bp

Guanine Count

1279043 bp

Cytosine Count

1294829 bp

Genome Length

3991891 bp

Protein-coding Genes

3764 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plp-dependent transferaseK8M09_21875Q9X0Z7Positive139281 - 14045342170.7
sugar abc transporter substrate-binding proteinK8M09_21880Q578M8Positive140491 - 14175346394.2
sugar abc transporter permeaseK8M09_21885O51924Positive141849 - 14276933685.0
carbohydrate abc transporter permeaseK8M09_21890Q7LYX6Positive142774 - 14360430386.2
sn-glycerol-3-phosphate abc transporter atp-binding protein ugpcK8M09_21895Q98G42Positive143616 - 14468338473.8
transcriptional regulator betiK8M09_21900B7M2V7Negative144705 - 14531322503.4
choline abc transporter substrate-binding proteinK8M09_21905Q9L4K3Positive145425 - 14635433628.1
alpha/beta hydrolaseK8M09_21910P07383Positive146351 - 14716928817.6
methylmalonyl-coa epimeraseK8M09_21915Q3IZP4Negative147176 - 14757713823.6
methylmalonyl-coa mutaseK8M09_21920O86028Negative147586 - 14971576576.5

Displaying genes 4381 – 4390 of 4728 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.