Shinella zoogloeoides 1-16M

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella zoogloeoides 1-16M is a bacterium characterized by possessing five replicons, which contribute to its genetic diversity and adaptability. This species is cataloged under multiple accessions: CP086610.1, CP086611.1, CP086612.1, CP086613.1, and CP086614.1, reflecting its genomic data available in public databases. The presence of multiple replicons can indicate a complex regulatory system within the bacterium, which may allow for efficient management of its metabolic processes and responses to environmental changes. Such genetic architecture might enhance its survival in varied ecological niches, particularly in environments where nutrient availability fluctuates. In terms of ecological insight, the ability of Shinella zoogloeoides to thrive in diverse conditions may suggest its role in biogeochemical cycles, particularly in the degradation of organic matter. The multiple replicons could also be an advantage in horizontal gene transfer, potentially allowing this species to acquire traits beneficial for its survival, such as antibiotic resistance or enhanced metabolic capabilities. Overall, the genetic complexity of Shinella zoogloeoides 1-16M, highlighted by its five replicons, positions it as a significant player in microbial ecosystems, possibly contributing to nutrient cycling and organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella zoogloeoides
Strain1-16M

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella zoogloeoides 1-16M, Complete Genome

Gene Summary

Adenine Count

713258 bp

Thymine Count

704761 bp

Guanine Count

1279043 bp

Cytosine Count

1294829 bp

Genome Length

3991891 bp

Protein-coding Genes

3764 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
u32 family peptidaseK8M09_21575P45527Positive72135 - 7311234994.7
u32 family peptidaseK8M09_21580P45475Positive73121 - 7404433324.0
sdia-regulated domain-containing proteinK8M09_21585Q0T8X4Positive74357 - 7522330543.8
helix-turn-helix domain-containing proteinK8M09_21590Not AvailablePositive75365 - 7594621062.5
fadr family transcriptional regulatorK8M09_21595P0ACL7Negative76295 - 7702926556.5
nad(p)-dependent oxidoreductaseK8M09_21600Q7CRQ0Negative77131 - 7792528320.7
5-dehydro-4-deoxy-d-glucuronate isomeraseK8M09_21605Q8UB75Positive78023 - 7884730172.0
2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdudK8M09_21610Q05528Positive78844 - 7958725502.3
5-dehydro-4-deoxyglucarate dehydrataseK8M09_21615Q8UB77Positive79690 - 8060132245.9
mandelate racemase/muconate lactonizing enzyme family proteinK8M09_21620A9CEQ8Positive80623 - 8175941241.7

Displaying genes 4321 – 4330 of 4728 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.