Shinella zoogloeoides 1-16M

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella zoogloeoides 1-16M is a bacterium characterized by possessing five replicons, which contribute to its genetic diversity and adaptability. This species is cataloged under multiple accessions: CP086610.1, CP086611.1, CP086612.1, CP086613.1, and CP086614.1, reflecting its genomic data available in public databases. The presence of multiple replicons can indicate a complex regulatory system within the bacterium, which may allow for efficient management of its metabolic processes and responses to environmental changes. Such genetic architecture might enhance its survival in varied ecological niches, particularly in environments where nutrient availability fluctuates. In terms of ecological insight, the ability of Shinella zoogloeoides to thrive in diverse conditions may suggest its role in biogeochemical cycles, particularly in the degradation of organic matter. The multiple replicons could also be an advantage in horizontal gene transfer, potentially allowing this species to acquire traits beneficial for its survival, such as antibiotic resistance or enhanced metabolic capabilities. Overall, the genetic complexity of Shinella zoogloeoides 1-16M, highlighted by its five replicons, positions it as a significant player in microbial ecosystems, possibly contributing to nutrient cycling and organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella zoogloeoides
Strain1-16M

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella zoogloeoides 1-16M, Complete Genome

Gene Summary

Adenine Count

713258 bp

Thymine Count

704761 bp

Guanine Count

1279043 bp

Cytosine Count

1294829 bp

Genome Length

3991891 bp

Protein-coding Genes

3764 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deor/glpr family dna-binding transcription regulatorK8M09_15130Q51391Negative3074622 - 307539227739.2
sdr family oxidoreductaseK8M09_15135P55575Positive3075529 - 307629927021.4
oxidoreductaseK8M09_15140Q5LS56Negative3076312 - 307730734955.2
lysr family transcriptional regulatorK8M09_15145P27111Positive3077401 - 307829433056.1
formate dehydrogenase subunit gammaK8M09_15150Q9I0J8Positive3078477 - 307895617378.0
nadh-quinone oxidoreductase subunit nuofK8M09_15155Q46507Positive3078953 - 308050954615.9
duf4287 domain-containing proteinK8M09_15160Not AvailablePositive3080506 - 30807217757.26
formate dehydrogenase subunit alphaK8M09_15165Q795Y4Positive3080776 - 3083655105579.0
formate dehydrogenase accessory sulfurtransferase fdhdK8M09_15170Q8UC79Positive3083722 - 308449827007.3
formate dehydrogenase subunit deltaK8M09_15175Not AvailablePositive3084508 - 30847569010.81

Displaying genes 3081 – 3090 of 4728 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.