Shinella zoogloeoides 1-16M

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella zoogloeoides 1-16M is a bacterium characterized by possessing five replicons, which contribute to its genetic diversity and adaptability. This species is cataloged under multiple accessions: CP086610.1, CP086611.1, CP086612.1, CP086613.1, and CP086614.1, reflecting its genomic data available in public databases. The presence of multiple replicons can indicate a complex regulatory system within the bacterium, which may allow for efficient management of its metabolic processes and responses to environmental changes. Such genetic architecture might enhance its survival in varied ecological niches, particularly in environments where nutrient availability fluctuates. In terms of ecological insight, the ability of Shinella zoogloeoides to thrive in diverse conditions may suggest its role in biogeochemical cycles, particularly in the degradation of organic matter. The multiple replicons could also be an advantage in horizontal gene transfer, potentially allowing this species to acquire traits beneficial for its survival, such as antibiotic resistance or enhanced metabolic capabilities. Overall, the genetic complexity of Shinella zoogloeoides 1-16M, highlighted by its five replicons, positions it as a significant player in microbial ecosystems, possibly contributing to nutrient cycling and organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella zoogloeoides
Strain1-16M

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella zoogloeoides 1-16M, Complete Genome

Gene Summary

Adenine Count

713258 bp

Thymine Count

704761 bp

Guanine Count

1279043 bp

Cytosine Count

1294829 bp

Genome Length

3991891 bp

Protein-coding Genes

3764 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate--trna ligaseK8M09_14180P15189Positive2864120 - 286557754522.0
lysine--trna ligaseK8M09_14185B5ZQW5Positive2865591 - 286708456456.4
hybrid-cluster nad(p)-dependent oxidoreductaseK8M09_14190P75824Negative2867150 - 286824740092.1
aromatic ring-hydroxylating dioxygenase subunit alphaK8M09_14195Q52438Negative2868249 - 286949347092.6
hypothetical proteinK8M09_14200Not AvailablePositive2870085 - 287069323401.1
diguanylate cyclaseK8M09_14205Q9KKZ4Negative2870700 - 287174937999.3
threonylcarbamoyl-amp synthaseK8M09_14210Q9UYB2Positive2871892 - 287286633734.7
fad-binding oxidoreductaseK8M09_14215P46681Positive2872875 - 287430550361.6
duf1217 domain-containing proteinK8M09_14220Not AvailableNegative2874306 - 287663084723.6
duf6101 family proteinK8M09_14225Not AvailablePositive2876926 - 287748920827.2

Displaying genes 2891 – 2900 of 4728 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.