Geobacter benzoatilyticus Jerry-YX

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Geobacterales

Family

Geobacteraceae

Genus

Geobacter

Description

**Geobacter benzoatilyticus Jerry-YX** is a Gram-negative bacterium characterized by the presence of flagella, which suggests the capability for motility. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The genome of G. benzoatilyticus is cataloged under the accession number CP071382.1. As a member of the Geobacter genus, G. benzoatilyticus is likely involved in biogeochemical processes, particularly in the degradation of aromatic compounds such as benzoate. This trait highlights its potential role in environmental bioremediation, where such microorganisms can facilitate the breakdown of pollutants. Additionally, the presence of flagella may enhance its ability to navigate toward favorable ecological niches, promoting its survival and interaction with other microorganisms in its habitat. The insights gained from studying G. benzoatilyticus can contribute to a better understanding of microbial communities and their functionalities in natural and engineered ecosystems. By harnessing the metabolic capabilities of this organism, there is potential for developing biotechnological applications, particularly in the context of waste treatment and environmental cleanup strategies.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusGeobacter
SpeciesGeobacter benzoatilyticus
StrainJerry-YX

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geobacter benzoatilyticus Jerry-YX, Complete Genome

Gene Summary

Adenine Count

762639 bp

Thymine Count

755583 bp

Guanine Count

1028858 bp

Cytosine Count

1036618 bp

Genome Length

3583698 bp

Protein-coding Genes

3252 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxy-tetrahydrodipicolinate synthaseJZM60_06895Q39Z67Positive1463784 - 146465631109.9
4-hydroxy-tetrahydrodipicolinate reductaseJZM60_06900Q39Z66Positive1464806 - 146560628235.3
ll-diaminopimelate aminotransferaseJZM60_06905Q39Z65Positive1465812 - 146704445224.9
nucleotidyltransferase family proteinJZM60_06910I3ZRF1Positive1467142 - 146744111261.7
dsba family proteinJZM60_06915Not AvailableNegative1467614 - 146815920328.2
type 1 glutamine amidotransferase domain-containing proteinJZM60_06920Q04432Negative1468249 - 146892323640.8
fic family proteinJZM60_06925Q8E9K5Positive1469318 - 147048443487.5
hypothetical proteinJZM60_06930Not AvailablePositive1471101 - 147245948601.2
diaminopimelate decarboxylaseJZM60_06935P00861Negative1472552 - 147387147957.3
peptide-methionine (s)-s-oxide reductase msraJZM60_06940Q6AG94Negative1474121 - 147470522020.8

Displaying genes 1421 – 1430 of 3341 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.