Geobacter sulfurreducens str. YM18

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Geobacterales

Family

Geobacteraceae

Genus

Geobacter

Description

Geobacter sulfurreducens strain YM18 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 30.0°C. This strain is part of a broader group of Geobacter species known for their ability to reduce metal ions and contribute to biogeochemical cycles, particularly in environments where organic matter is present. G. sulfurreducens YM18 is notable for its versatile habitat utilization, suggesting it can adapt to a variety of anaerobic environments. This adaptability may enable it to play significant roles in the degradation of organic compounds and in the reduction of metal oxides in various ecosystems, including sediments and subsurface environments. The metabolic pathways employed by this strain facilitate electron transfer processes that are crucial for energy acquisition in oxygen-limited settings. The ecological significance of G. sulfurreducens YM18 lies in its potential applications in bioremediation and bioenergy, particularly in the context of microbial fuel cells, where its ability to transfer electrons to electrodes could be harnessed for sustainable energy production. Furthermore, the strain's adaptation to multiple habitats underscores the importance of anaerobic microorganisms in maintaining ecosystem functions, particularly in conditions where oxygen is scarce.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusGeobacter
SpeciesGeobacter sulfurreducens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Geobacter sulfurreducens str. YM18
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geobacter sulfurreducens str. YM18

Accession NumberNZ_AP017912.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative tail tube protein 2GsYM18_RS04885Not Available+1039683 - 104012016545.6
hypothetical proteinGsYM18_RS04890Not Available+1040143 - 104050513368.2
duf6760 family proteinGsYM18_RS17435Not Available+1040526 - 10406816170.21
Putative tail tube protein 2GsYM18_RS04900Not Available+1040741 - 104117516341.5
hypothetical proteinGsYM18_RS04905Not Available+1041179 - 104236041630.3
peptidoglycan-binding proteinGsYM18_RS04910Not Available+1042376 - 104299322792.2
Tail proteinGsYM18_RS04915Not Available+1042997 - 104408539296.3
Putative baseplate hub subunit and tail lysozymeGsYM18_RS04920Not Available+1044072 - 104472823252.4
paar domain-containing proteinGsYM18_RS04925Not Available+1044961 - 10452579522.56
Base plate wedge subunitGsYM18_RS04930Not Available+1045268 - 104566914790.9

Displaying genes 1 – 10 of 3382 in total

Pathways

20 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

154 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da

Displaying 1–10 of 154 metabolites