Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | IZT61_00210 | Q6GK52 | Positive | 45147 - 46112 | 36832.1 |
| lyttr family transcriptional regulator dna-binding domain-containing protein | IZT61_00215 | P0DUE7 | Positive | 46090 - 46824 | 27646.6 |
| 50s ribosomal protein l34 | IZT61_00220 | A6KXS6 | Positive | 47130 - 47288 | 6263.67 |
| ribonuclease p protein component | IZT61_00225 | B2RHI3 | Positive | 47378 - 47773 | 15811.3 |
| membrane protein insertion efficiency factor yidd | IZT61_00230 | A9M153 | Positive | 47760 - 47990 | 8664.84 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | IZT61_00235 | Q87RD1 | Positive | 48322 - 49020 | 24979.8 |
| hypothetical protein | IZT61_00240 | Not Available | Negative | 49210 - 50622 | 53399.2 |
| hypothetical protein | IZT61_00245 | Not Available | Negative | 50652 - 52220 | 59721.6 |
| duf423 domain-containing protein | IZT61_00250 | Q2YS64 | Positive | 52366 - 52752 | 14312.0 |
| primosomal protein n' | IZT61_00255 | P94461 | Positive | 52752 - 55232 | 93884.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

