Pedobacter endophyticus JBR3-12

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter endophyticus JBR3-12 is a bacterial species characterized by its motility, attributed to the presence of flagella. This trait enables the organism to navigate its environment, potentially enhancing its interactions with other microorganisms and host plants. The genome of P. endophyticus JBR3-12 consists of a single replicon, which may indicate a streamlined genomic organization conducive to its ecological niche. This bacterium is cataloged under the accession number CP064939.1, which provides a reference for its genetic sequence and facilitates further research into its biological functions and capabilities. The presence of a singular replicon can suggest a stable genomic structure that might be advantageous in specific environmental conditions. Overall, the characteristics of Pedobacter endophyticus JBR3-12, particularly its motility and genomic organization, may play a significant role in its ecological interactions, including its potential as an endophyte. As an endophytic bacterium, it may contribute to plant health by promoting growth or providing protection against pathogens. These traits suggest that P. endophyticus JBR3-12 could be an important player in the microbiome of its host, potentially influencing nutrient cycling and plant resilience in its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter endophyticus
StrainJBR3-12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter endophyticus JBR3-12, Complete Genome

Gene Summary

Adenine Count

1588031 bp

Thymine Count

1595629 bp

Guanine Count

1118331 bp

Cytosine Count

1124079 bp

Genome Length

5426070 bp

Protein-coding Genes

4366 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uma2 family endonucleaseIZT61_21965P72821Positive5380431 - 538106924339.3
uma2 family endonucleaseIZT61_21970P72873Positive5381069 - 538171324640.4
valine--trna ligaseIZT61_21975A6LIG7Positive5382381 - 5385071103151.0
gfo/idh/moca family oxidoreductaseIZT61_21980B5F3F4Positive5385584 - 538693950819.3
duf1080 domain-containing proteinIZT61_21985Not AvailablePositive5386976 - 538834050104.9
gfo/idh/moca family oxidoreductaseIZT61_21990T2KNC8Positive5388340 - 538953344329.3
type i restriction enzyme hsdr n-terminal domain-containing proteinIZT61_21995Not AvailableNegative5389836 - 539029417720.8
sumf1/egtb/pvdo family nonheme iron enzymeIZT61_22000V9TSX0Negative5390357 - 539103725977.6
dna polymerase iii subunit deltaIZT61_22005P54459Positive5391133 - 539215538751.0
hypothetical proteinIZT61_22010P23648Negative5392245 - 539371754022.6

Displaying genes 4391 – 4400 of 4428 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.