Pedobacter endophyticus JBR3-12

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter endophyticus JBR3-12 is a bacterial species characterized by its motility, attributed to the presence of flagella. This trait enables the organism to navigate its environment, potentially enhancing its interactions with other microorganisms and host plants. The genome of P. endophyticus JBR3-12 consists of a single replicon, which may indicate a streamlined genomic organization conducive to its ecological niche. This bacterium is cataloged under the accession number CP064939.1, which provides a reference for its genetic sequence and facilitates further research into its biological functions and capabilities. The presence of a singular replicon can suggest a stable genomic structure that might be advantageous in specific environmental conditions. Overall, the characteristics of Pedobacter endophyticus JBR3-12, particularly its motility and genomic organization, may play a significant role in its ecological interactions, including its potential as an endophyte. As an endophytic bacterium, it may contribute to plant health by promoting growth or providing protection against pathogens. These traits suggest that P. endophyticus JBR3-12 could be an important player in the microbiome of its host, potentially influencing nutrient cycling and plant resilience in its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter endophyticus
StrainJBR3-12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter endophyticus JBR3-12, Complete Genome

Gene Summary

Adenine Count

1588031 bp

Thymine Count

1595629 bp

Guanine Count

1118331 bp

Cytosine Count

1124079 bp

Genome Length

5426070 bp

Protein-coding Genes

4366 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sulfatase-like hydrolase/transferaseIZT61_21665Q8XNV1Negative5309878 - 531135655526.7
hypothetical proteinIZT61_21670Not AvailableNegative5311965 - 531249220237.6
2,3-bisphosphoglycerate-independent phosphoglycerate mutaseIZT61_21675A6H1H2Negative5312492 - 531401255457.5
duf4783 domain-containing proteinIZT61_21680Not AvailablePositive5314186 - 531458415133.2
carboxylating nicotinate-nucleotide diphosphorylaseIZT61_21685P77938Positive5315272 - 531611430291.8
glycerol-3-phosphate 1-o-acyltransferase plsyIZT61_21690Q834K7Positive5316164 - 531681123197.1
m48 family metallopeptidaseIZT61_21695Q9P7G4Positive5316900 - 531770328825.5
chorismate-binding proteinIZT61_21700P05041Negative5317996 - 531925247562.4
type ii toxin-antitoxin system rele/pare family toxinIZT61_21705Not AvailableNegative5319813 - 532011512022.4
hypothetical proteinIZT61_21710Not AvailableNegative5320112 - 53203398662.36

Displaying genes 4331 – 4340 of 4428 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.