Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hd domain-containing protein | IZT61_00160 | O05502 | + | 34314 - 35168 | 32015.6 |
| twin-arginine translocase tata/tate family subunit | IZT61_00165 | A5FL65 | + | 35262 - 35402 | 5124.64 |
| hypothetical protein | IZT61_00170 | Not Available | + | 35457 - 35672 | 8085.79 |
| hypothetical protein | IZT61_00175 | Not Available | - | 35680 - 36072 | 15566.4 |
| pkd domain-containing protein | IZT61_00180 | Q58863 | + | 36303 - 39875 | 128429.0 |
| type ix secretion system membrane protein porp/sprf | IZT61_00185 | Not Available | + | 39879 - 40889 | 37626.9 |
| rna polymerase factor sigma-54 | IZT61_00190 | P26979 | - | 40967 - 42439 | 56734.4 |
| large conductance mechanosensitive channel protein mscl | IZT61_00195 | Q3SRA3 | + | 42604 - 43050 | 16260.3 |
| chan family lipoprotein | IZT61_00200 | Not Available | - | 43120 - 43992 | 33092.7 |
| hypothetical protein | IZT61_00205 | Not Available | + | 44122 - 44895 | 27841.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.