Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylpyrophosphate synthetase | IZT61_01710 | Not Available | Negative | 398093 - 398401 | 11353.3 |
| yiid c-terminal domain-containing protein | IZT61_01715 | Not Available | Positive | 398482 - 398967 | 18899.0 |
| atp-binding protein | IZT61_01720 | Q4R3B7 | Positive | 398976 - 399608 | 23679.7 |
| mate family efflux transporter | IZT61_01725 | Q8UDF5 | Positive | 400054 - 401421 | 49413.8 |
| hypothetical protein | IZT61_01730 | Not Available | Negative | 401558 - 402019 | 16938.6 |
| hypothetical protein | IZT61_01735 | Not Available | Negative | 402063 - 402797 | 27189.5 |
| pseudouridylate synthase | IZT61_01740 | Q9KTL4 | Negative | 402837 - 403520 | 26175.7 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | IZT61_01745 | P77489 | Negative | 404172 - 406295 | 76310.5 |
| xanthine dehydrogenase family protein subunit m | IZT61_01750 | P77324 | Negative | 406298 - 407281 | 35318.0 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | IZT61_01755 | Q8X6I9 | Negative | 407278 - 407901 | 22169.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

