Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| giy-yig nuclease family protein | IZT61_01460 | Not Available | Positive | 340234 - 340584 | 13748.8 |
| pd40 domain-containing protein | IZT61_01465 | Q8UEU8 | Negative | 340967 - 344119 | 118592.0 |
| penicillin-binding protein | IZT61_01470 | O66874 | Negative | 344228 - 346678 | 93296.4 |
| polyphosphate kinase 2 family protein | IZT61_01475 | Q6N140 | Positive | 346822 - 347700 | 33930.5 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 347874 - 348283 | Not Available |
| cytochrome c | IZT61_01485 | P04164 | Negative | 348462 - 348887 | 15649.8 |
| sco family protein | IZT61_01490 | P54178 | Negative | 349041 - 349691 | 24613.5 |
| hypothetical protein | IZT61_01495 | Not Available | Negative | 349851 - 350306 | 17346.1 |
| transporter | IZT61_01500 | Not Available | Negative | 350317 - 351294 | 36017.8 |
| cytochrome-c peroxidase | IZT61_01505 | Q50426 | Negative | 351257 - 352243 | 36323.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

