Pedobacter endophyticus JBR3-12

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter endophyticus JBR3-12 is a bacterial species characterized by its motility, attributed to the presence of flagella. This trait enables the organism to navigate its environment, potentially enhancing its interactions with other microorganisms and host plants. The genome of P. endophyticus JBR3-12 consists of a single replicon, which may indicate a streamlined genomic organization conducive to its ecological niche. This bacterium is cataloged under the accession number CP064939.1, which provides a reference for its genetic sequence and facilitates further research into its biological functions and capabilities. The presence of a singular replicon can suggest a stable genomic structure that might be advantageous in specific environmental conditions. Overall, the characteristics of Pedobacter endophyticus JBR3-12, particularly its motility and genomic organization, may play a significant role in its ecological interactions, including its potential as an endophyte. As an endophytic bacterium, it may contribute to plant health by promoting growth or providing protection against pathogens. These traits suggest that P. endophyticus JBR3-12 could be an important player in the microbiome of its host, potentially influencing nutrient cycling and plant resilience in its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter endophyticus
StrainJBR3-12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter endophyticus JBR3-12, Complete Genome

Gene Summary

Adenine Count

1588031 bp

Thymine Count

1595629 bp

Guanine Count

1118331 bp

Cytosine Count

1124079 bp

Genome Length

5426070 bp

Protein-coding Genes

4366 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
laci family dna-binding transcriptional regulatorIZT61_14155Q45831Negative3485053 - 348608738546.3
tonb-dependent receptorIZT61_14160T2KPJ3Positive3486341 - 3489529117404.0
ragb/susd family nutrient uptake outer membrane proteinIZT61_14165T2KNB8Positive3489553 - 349134966151.5
duf5123 domain-containing proteinIZT61_14170Not AvailablePositive3491360 - 349295856853.3
pectin esteraseIZT61_14175Q8L7Q7Positive3493427 - 349442836753.7
rhamnogalacturonan acetylesteraseIZT61_14180O31523Positive3494902 - 349564827439.0
nadp-dependent glyceraldehyde-3-phosphate dehydrogenaseIZT61_14185Q59931Negative3495698 - 349732360328.7
mfs transporterIZT61_14190P0AA79Negative3497467 - 349890653408.6
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseIZT61_14195P50846Negative3498927 - 349958924161.6
sugar kinaseIZT61_14200D4GSE6Negative3499772 - 350082138800.6

Displaying genes 2831 – 2840 of 4428 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.