Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | IZT61_12605 | Not Available | Positive | 3124343 - 3125087 | 27739.6 |
| duf2071 domain-containing protein | IZT61_12610 | Not Available | Positive | 3125164 - 3125868 | 26581.7 |
| co-chaperone groes | IZT61_12615 | B3QPB6 | Positive | 3126583 - 3126873 | 10216.1 |
| chaperonin groel | IZT61_12620 | Q11U19 | Positive | 3126959 - 3128596 | 57607.2 |
| pkd domain-containing protein | IZT61_12625 | Q58863 | Positive | 3128904 - 3134828 | 207371.0 |
| porp/sprf family type ix secretion system membrane protein | IZT61_12630 | Not Available | Positive | 3134825 - 3135844 | 37584.1 |
| mgtc/sapb family protein | IZT61_12635 | P0AFV3 | Positive | 3135870 - 3136529 | 24241.5 |
| l-serine ammonia-lyase | IZT61_12640 | O86564 | Positive | 3137189 - 3138616 | 51045.3 |
| aec family transporter | IZT61_12645 | Q58437 | Negative | 3138814 - 3139725 | 32987.8 |
| dead/deah box helicase | IZT61_12650 | Q8Y8N0 | Negative | 3139792 - 3141024 | 46113.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

