Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gliding motility-associated c-terminal domain-containing protein | IZT61_12555 | Not Available | Negative | 3106721 - 3109345 | 92602.6 |
| duf4397 domain-containing protein | IZT61_12560 | Not Available | Negative | 3109421 - 3110233 | 28993.6 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_12565 | Not Available | Negative | 3110253 - 3111806 | 57140.2 |
| susc/raga family tonb-linked outer membrane protein | IZT61_12570 | T2KM18 | Negative | 3111818 - 3114895 | 111558.0 |
| deor/glpr transcriptional regulator | IZT61_12575 | Q92ET8 | Positive | 3115149 - 3115895 | 27524.5 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_12580 | Not Available | Negative | 3115935 - 3117230 | 46138.9 |
| susc/raga family tonb-linked outer membrane protein | IZT61_12585 | T2KM18 | Negative | 3117247 - 3120384 | 113041.0 |
| anhydro-n-acetylmuramic acid kinase | IZT61_12590 | Q15RS7 | Negative | 3120478 - 3121674 | 43016.8 |
| hypothetical protein | IZT61_12595 | Not Available | Positive | 3121726 - 3121926 | 7481.17 |
| glucosamine-6-phosphate deaminase | IZT61_12600 | Q8AB53 | Positive | 3122185 - 3124110 | 72594.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

