Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (2fe-2s)-binding protein | IZT61_12505 | Q4UKL2 | Positive | 3087470 - 3087796 | 11831.2 |
| glycosyl hydrolase | IZT61_12510 | Q5H7P5 | Negative | 3088288 - 3090903 | 99414.5 |
| gh92 family glycosyl hydrolase | IZT61_12515 | O86365 | Negative | 3091496 - 3093754 | 83617.2 |
| alpha-l-fucosidase | IZT61_12520 | Q60HF8 | Negative | 3093852 - 3095177 | 50727.5 |
| s41 family peptidase | IZT61_12525 | Q44879 | Negative | 3095201 - 3096892 | 62118.8 |
| hypothetical protein | IZT61_12530 | Not Available | Negative | 3097344 - 3097559 | 8307.05 |
| port family protein | IZT61_12535 | Not Available | Positive | 3097728 - 3098330 | 21608.7 |
| pqq-binding-like beta-propeller repeat protein | IZT61_12540 | D5V0N9 | Positive | 3098767 - 3100605 | 67626.5 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_12545 | T2KPM5 | Negative | 3100913 - 3102565 | 61352.8 |
| tonb-dependent receptor | IZT61_12550 | T2KM18 | Negative | 3102574 - 3105792 | 117786.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

