Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| jab domain-containing protein | IZT61_12400 | A5FMW5 | Positive | 3059104 - 3059559 | 16956.4 |
| site-specific integrase | IZT61_12405 | Q1QSU9 | Negative | 3059751 - 3060866 | 43071.8 |
| methionine--trna ligase | IZT61_12415 | Q11RM3 | Negative | 3061049 - 3063199 | 81311.9 |
| ld-carboxypeptidase | IZT61_12420 | O34851 | Positive | 3063198 - 3064097 | 33759.6 |
| doxx family protein | IZT61_12425 | P44069 | Positive | 3064098 - 3064505 | 14496.3 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_12430 | T2KN63 | Negative | 3064602 - 3066104 | 55779.6 |
| tonb-dependent receptor | IZT61_12435 | T2KPJ3 | Negative | 3066129 - 3069302 | 115344.0 |
| lysophospholipid acyltransferase family protein | IZT61_12440 | P44567 | Positive | 3069711 - 3070628 | 35899.0 |
| serine hydrolase | IZT61_12445 | P07061 | Positive | 3070660 - 3071850 | 44708.7 |
| type 1 glutamine amidotransferase | IZT61_12450 | Q5JGM7 | Negative | 3072039 - 3072599 | 20234.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

