Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | IZT61_12250 | Not Available | Negative | 3024952 - 3025269 | 12036.9 |
| hypothetical protein | IZT61_12255 | Not Available | Negative | 3025421 - 3026170 | 29437.9 |
| hypothetical protein | IZT61_12260 | Not Available | Positive | 3026827 - 3027480 | 25855.2 |
| hypothetical protein | IZT61_12265 | Not Available | Positive | 3027477 - 3029564 | 80532.3 |
| hypothetical protein | IZT61_12270 | Not Available | Positive | 3029564 - 3031345 | 67236.9 |
| hypothetical protein | IZT61_12275 | Not Available | Positive | 3032419 - 3033192 | 29816.7 |
| nucleotide-binding protein | IZT61_12280 | Q9JMR6 | Positive | 3033653 - 3034381 | 26419.9 |
| ribonuclease h family protein | IZT61_12285 | Q9KEI9 | Positive | 3034382 - 3035014 | 24041.4 |
| hypothetical protein | IZT61_12290 | Not Available | Negative | 3035321 - 3035596 | 10834.2 |
| integrase catalytic domain-containing protein | IZT61_12295 | Q4L6J7 | Negative | 3036080 - 3036619 | 21004.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

