Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hnh endonuclease | IZT61_12150 | P50191 | Positive | 2998358 - 2999482 | 44173.9 |
| hypothetical protein | IZT61_12155 | Not Available | Negative | 2999503 - 3000411 | 34823.4 |
| duf3696 domain-containing protein | IZT61_12160 | Not Available | Negative | 3000412 - 3001419 | 37757.8 |
| duf262 domain-containing protein | IZT61_12165 | Not Available | Negative | 3001412 - 3003100 | 65474.3 |
| aipr family protein | IZT61_12170 | Not Available | Negative | 3003581 - 3005986 | 91492.6 |
| pd-(d/e)xk motif protein | IZT61_12175 | Not Available | Negative | 3005977 - 3006954 | 37430.9 |
| z1 domain-containing protein | IZT61_12180 | Not Available | Negative | 3006958 - 3010134 | 120240.0 |
| atp-binding protein | IZT61_12185 | Not Available | Negative | 3010135 - 3011661 | 58761.4 |
| very short patch repair endonuclease | IZT61_12190 | Q9RLM5 | Positive | 3012249 - 3012734 | 18791.0 |
| helix-turn-helix transcriptional regulator | IZT61_12195 | Not Available | Negative | 3012927 - 3013136 | 8178.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

