Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m14 family metallopeptidase | IZT61_11950 | A6XHF7 | Negative | 2943552 - 2945291 | 65693.2 |
| peptidase t | IZT61_11955 | A8FIY2 | Positive | 2945473 - 2946726 | 45862.4 |
| aldose 1-epimerase family protein | IZT61_11960 | P23496 | Positive | 2946853 - 2947719 | 33295.5 |
| ompa family protein | IZT61_11965 | P13794 | Negative | 2948596 - 2949126 | 19233.1 |
| hypothetical protein | IZT61_11970 | Not Available | Negative | 2949439 - 2950347 | 32354.8 |
| hypothetical protein | IZT61_11975 | Not Available | Negative | 2950373 - 2951146 | 28361.2 |
| sigma-70 family rna polymerase sigma factor | IZT61_11980 | Q45585 | Negative | 2951139 - 2951699 | 21814.2 |
| porp/sprf family type ix secretion system membrane protein | IZT61_11985 | Not Available | Negative | 2951958 - 2952836 | 32876.9 |
| gliding motility-associated c-terminal domain-containing protein | IZT61_11990 | Not Available | Negative | 2952901 - 2959248 | 214933.0 |
| abc transporter substrate-binding protein | IZT61_11995 | Not Available | Negative | 2959259 - 2960410 | 42034.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

