Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2807 domain-containing protein | IZT61_11900 | Not Available | Positive | 2932891 - 2933487 | 21381.6 |
| alpha/beta hydrolase | IZT61_11905 | A1VUV0 | Positive | 2933647 - 2934633 | 36968.1 |
| rne/rng family ribonuclease | IZT61_11910 | P45175 | Negative | 2934730 - 2936280 | 58716.4 |
| tetratricopeptide repeat protein | IZT61_11915 | Not Available | Negative | 2936571 - 2937446 | 31180.4 |
| integration host factor subunit beta | IZT61_11920 | P36206 | Negative | 2937457 - 2937759 | 11077.6 |
| a/g-specific adenine glycosylase | IZT61_11925 | P83847 | Positive | 2937924 - 2938985 | 40800.1 |
| single-stranded dna-binding protein | IZT61_11930 | P66848 | Positive | 2939042 - 2939485 | 16579.7 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | IZT61_11935 | Q8AAB1 | Negative | 2939559 - 2941397 | 67634.7 |
| hypothetical protein | IZT61_11940 | Not Available | Positive | 2941918 - 2942883 | 37489.2 |
| rhomboid family intramembrane serine protease | IZT61_11945 | O14364 | Negative | 2942939 - 2943547 | 23098.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

