Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_11800 | Not Available | Negative | 2907191 - 2908690 | 55317.9 |
| susc/raga family tonb-linked outer membrane protein | IZT61_11805 | T2KM18 | Negative | 2908709 - 2911765 | 111017.0 |
| hypothetical protein | IZT61_11810 | Not Available | Positive | 2912095 - 2912736 | 23756.4 |
| glucose-1-phosphate thymidylyltransferase rfba | IZT61_11815 | P55254 | Negative | 2913227 - 2914087 | 31308.1 |
| dtdp-4-dehydrorhamnose reductase | IZT61_11820 | O66251 | Negative | 2914140 - 2915009 | 31657.7 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | IZT61_11825 | P37780 | Negative | 2915002 - 2915550 | 20554.2 |
| dtdp-glucose 4,6-dehydratase | IZT61_11830 | P37777 | Negative | 2915550 - 2916602 | 39834.3 |
| duf3109 family protein | IZT61_11835 | Not Available | Negative | 2917182 - 2917745 | 21422.7 |
| duf3108 domain-containing protein | IZT61_11840 | Not Available | Negative | 2917748 - 2918521 | 29494.5 |
| duf2480 family protein | IZT61_11845 | Not Available | Negative | 2918820 - 2919335 | 19354.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

