Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoaspartyl peptidase/l-asparaginase | IZT61_11750 | Q8YQB1 | Positive | 2890617 - 2891468 | 30116.2 |
| hypothetical protein | IZT61_11755 | Not Available | Positive | 2891498 - 2892184 | 25691.8 |
| carboxy terminal-processing peptidase | IZT61_11760 | P43669 | Positive | 2892451 - 2894640 | 80770.8 |
| crp/fnr family transcriptional regulator | IZT61_11765 | A5F890 | Negative | 2895249 - 2895824 | 22645.5 |
| glpgli family protein | IZT61_11770 | Not Available | Negative | 2895873 - 2896652 | 29404.2 |
| tonb-dependent receptor | IZT61_11775 | Not Available | Negative | 2896663 - 2899467 | 104242.0 |
| aldehyde dehydrogenase family protein | IZT61_11780 | Q2KJC9 | Negative | 2900509 - 2902050 | 55168.7 |
| m1 family metallopeptidase | IZT61_11785 | Q9USX1 | Positive | 2902174 - 2904684 | 93044.3 |
| mechanosensitive ion channel | IZT61_11790 | Q58111 | Positive | 2905192 - 2906088 | 33356.6 |
| duf1735 domain-containing protein | IZT61_11795 | Not Available | Negative | 2906281 - 2907177 | 31666.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

