Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-tyrosyl-trna(tyr) deacylase | IZT61_11700 | A6LG62 | Positive | 2877899 - 2878351 | 16182.7 |
| nucleotide pyrophosphohydrolase | IZT61_11705 | P42979 | Positive | 2878646 - 2878975 | 12479.9 |
| duf4286 family protein | IZT61_11710 | Not Available | Negative | 2879059 - 2879361 | 11659.0 |
| hypothetical protein | IZT61_11715 | Not Available | Positive | 2879599 - 2880144 | 20964.4 |
| tetratricopeptide repeat protein | IZT61_11720 | Q58823 | Negative | 2880141 - 2881964 | 69363.0 |
| s9 family peptidase | IZT61_11725 | V5YMB3 | Positive | 2882192 - 2884078 | 71839.9 |
| hamp domain-containing histidine kinase | IZT61_11730 | Q08408 | Positive | 2884082 - 2885767 | 64359.1 |
| response regulator transcription factor | IZT61_11735 | Q4LAJ9 | Positive | 2885811 - 2886500 | 26335.1 |
| cyanophycin synthetase | IZT61_11740 | P56947 | Negative | 2886608 - 2889223 | 96453.1 |
| cyanophycinase | IZT61_11745 | P0C8P2 | Positive | 2889511 - 2890389 | 31459.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

