Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | IZT61_11650 | Q8A1G1 | Positive | 2867246 - 2869627 | 88216.3 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | IZT61_11655 | P08066 | Negative | 2870198 - 2870968 | 27779.4 |
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | IZT61_11660 | P08065 | Negative | 2871034 - 2873013 | 73005.5 |
| succinate dehydrogenase cytochrome b subunit | IZT61_11665 | Not Available | Negative | 2873032 - 2873712 | 25249.4 |
| cold-shock protein | IZT61_11670 | O30875 | Negative | 2874593 - 2874784 | 6902.07 |
| thioredoxin family protein | IZT61_11675 | Not Available | Positive | 2875066 - 2875671 | 22528.2 |
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_11680 | Not Available | Negative | 2875672 - 2876001 | 12331.0 |
| hypothetical protein | IZT61_11685 | Not Available | Negative | 2875991 - 2876197 | 7911.58 |
| atp-dependent clp protease adaptor clps | IZT61_11690 | P67648 | Negative | 2876236 - 2876517 | 10909.0 |
| ketoacyl-acp synthase iii | IZT61_11695 | A1U0E3 | Positive | 2876693 - 2877739 | 38255.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

