Pedobacter endophyticus JBR3-12

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter endophyticus JBR3-12 is a bacterial species characterized by its motility, attributed to the presence of flagella. This trait enables the organism to navigate its environment, potentially enhancing its interactions with other microorganisms and host plants. The genome of P. endophyticus JBR3-12 consists of a single replicon, which may indicate a streamlined genomic organization conducive to its ecological niche. This bacterium is cataloged under the accession number CP064939.1, which provides a reference for its genetic sequence and facilitates further research into its biological functions and capabilities. The presence of a singular replicon can suggest a stable genomic structure that might be advantageous in specific environmental conditions. Overall, the characteristics of Pedobacter endophyticus JBR3-12, particularly its motility and genomic organization, may play a significant role in its ecological interactions, including its potential as an endophyte. As an endophytic bacterium, it may contribute to plant health by promoting growth or providing protection against pathogens. These traits suggest that P. endophyticus JBR3-12 could be an important player in the microbiome of its host, potentially influencing nutrient cycling and plant resilience in its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter endophyticus
StrainJBR3-12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter endophyticus JBR3-12, Complete Genome

Gene Summary

Adenine Count

1588031 bp

Thymine Count

1595629 bp

Guanine Count

1118331 bp

Cytosine Count

1124079 bp

Genome Length

5426070 bp

Protein-coding Genes

4366 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorIZT61_11650Q8A1G1Positive2867246 - 286962788216.3
succinate dehydrogenase/fumarate reductase iron-sulfur subunitIZT61_11655P08066Negative2870198 - 287096827779.4
fumarate reductase/succinate dehydrogenase flavoprotein subunitIZT61_11660P08065Negative2871034 - 287301373005.5
succinate dehydrogenase cytochrome b subunitIZT61_11665Not AvailableNegative2873032 - 287371225249.4
cold-shock proteinIZT61_11670O30875Negative2874593 - 28747846902.07
thioredoxin family proteinIZT61_11675Not AvailablePositive2875066 - 287567122528.2
type ii toxin-antitoxin system rele/pare family toxinIZT61_11680Not AvailableNegative2875672 - 287600112331.0
hypothetical proteinIZT61_11685Not AvailableNegative2875991 - 28761977911.58
atp-dependent clp protease adaptor clpsIZT61_11690P67648Negative2876236 - 287651710909.0
ketoacyl-acp synthase iiiIZT61_11695A1U0E3Positive2876693 - 287773938255.6

Displaying genes 2331 – 2340 of 4428 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.